Gene detail

Detailed information of OS493_037401-T1 in Lophelia pertusa

Genomic Location: scaffold_422:75281...85253
NR annotation: KAJ7382065.1, Katanin p60 ATPase-containing subunit A1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U3S1	Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio OX=7955 GN=katnal1 PE=2 SV=1
B3EX35	Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus OX=42254 GN=KATNAL1 PE=3 SV=1
O61577	Katanin p60 ATPase-containing subunit A1 OS=Strongylocentrotus purpuratus OX=7668 GN=KATNA1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21126 all species →	KATNA1_MIT	Katanin p60 subunit A1, MIT domain	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336 all species →	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048611 all species →	Domain	Katanin p60 ATPase-containing subunit A1, MIT domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050304 all species →	Family	Microtubule-severing AAA ATPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR028596 all species →	Family	Katanin p60 subunit A1	Interproscan
IPR015415 all species →	Domain	Spastin/Vps4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074 all species →	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0051013 all species →	Biological Process	microtubule severing	Interproscan
GO:0140603 all species →	Molecular Function	obsolete ATP hydrolysis activity	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0008568 all species →	Molecular Function	microtubule severing ATPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07767	KATNA1; katanin p60 ATPase-containing subunit A1	EC:5.6.1.1	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037401-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

36.1Max TPM

20.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.42	31.93
polyp at pH7 6	18	18	21.20	31.20
coral polyp · control treatment	16	16	23.82	34.29
coral polyp · oil and dispersant treatment	16	16	20.57	33.38
coral polyp · oil treatment	16	16	22.19	34.86
coral polyp · dispersant treatment	16	16	13.37	21.78
Polyp	10	10	18.60	36.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.53
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.40
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.44
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.21

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.