Detailed information of OS493_037404-T1 in Lophelia pertusa

Genomic Location: scaffold_422:112276...118886
NR annotation: KAJ7382068.1, Charged multivesicular body protein 1b [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7ZVB1Charged multivesicular body protein 1b OS=Danio rerio OX=7955 GN=chmp1b PE=2 SV=1
Q6DF27Charged multivesicular body protein 1b OS=Xenopus tropicalis OX=8364 GN=chmp1b PE=2 SV=1
Q7SZB5Charged multivesicular body protein 1b OS=Xenopus laevis OX=8355 GN=chmp1b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03357
all species →		Snf7Snf7FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005024
all species →		FamilySnf7 familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10476
all species →		CHARGED MULTIVESICULAR BODY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007034
all species →		Biological Processvacuolar transportInterproscan
GO:0000815
all species →		Cellular ComponentESCRT III complexInterproscan
GO:0005771
all species →		Cellular Componentmultivesicular bodyInterproscan
GO:0015031
all species →		Biological Processprotein transportInterproscan
GO:0032509
all species →		Biological Processendosome transport via multivesicular body sorting pathwayInterproscan
GO:0045324
all species →		Biological Processlate endosome to vacuole transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12197CHMP1, VPS46, DID2; charged multivesicular body protein 1-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_037404-T1 global co-expression network
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