Gene detail

Detailed information of OS493_037420-T1 in Lophelia pertusa

Genomic Location: scaffold_423:139459...149558
NR annotation: KAJ7376027.1, hypothetical protein OS493_037420 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8V7S0	CUB and peptidase domain-containing protein 1 (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
P00764	Trypsin OS=Squalus acanthias OX=7797 PE=1 SV=1
P40313	Chymotrypsin-like protease CTRL-1 OS=Homo sapiens OX=9606 GN=CTRL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000120 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR012224 all species →	Family	Peptidase S1A, coagulation factor VII/IX/X/C/Z	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR050127 all species →	Family	Serine Proteases (Peptidase S1 Family)	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264 all species →	TRYPSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007596 all species →	Biological Process	blood coagulation	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037420-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037420-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

79TPM > 0

7Conditions

6.0Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	0.56	1.32
polyp at pH7 6	18	7	0.23	0.88
coral polyp · control treatment	16	13	0.78	3.77
coral polyp · oil and dispersant treatment	16	12	0.25	0.80
coral polyp · oil treatment	16	12	0.86	5.97
coral polyp · dispersant treatment	16	14	0.70	2.14
Polyp	10	8	1.11	2.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.