Gene detail

Detailed information of OS493_037457-T1 in Lophelia pertusa

Genomic Location: scaffold_427:49008...55396
NR annotation: KAJ7388465.1, Cilia- and flagella-associated protein 36 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RM35	Cilia- and flagella-associated protein 36 OS=Danio rerio OX=7955 GN=cfap36 PE=2 SV=2
Q8C6E0	Cilia- and flagella-associated protein 36 OS=Mus musculus OX=10090 GN=Cfap36 PE=1 SV=1
Q4V8E4	Cilia- and flagella-associated protein 36 OS=Rattus norvegicus OX=10116 GN=Cfap36 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005588 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11527 all species →	ARL2_Bind_BART	The ARF-like 2 binding protein BART	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042541 all species →	Homologous_superfamily	BART domain superfamily	Interproscan
IPR038888 all species →	Family	Cilia- and flagella-associated protein 36	Interproscan
IPR023379 all species →	Domain	BART domain	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21532 all species →	PHOSPHODIESTERASE HL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0097546 all species →	Cellular Component	ciliary base	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25395	CFAP36; cilia- and flagella-associated protein 36	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037457-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

102.0Max TPM

40.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.38	39.68
polyp at pH7 6	18	18	27.52	43.94
coral polyp · control treatment	16	16	61.03	102.01
coral polyp · oil and dispersant treatment	16	16	60.01	98.00
coral polyp · oil treatment	16	16	51.66	80.35
coral polyp · dispersant treatment	16	16	30.16	41.67
Polyp	10	10	19.96	37.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.96
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.52
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.39
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.29
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	37.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.41

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.