Gene detail

Detailed information of OS493_037502-T1 in Lophelia pertusa

Genomic Location: scaffold_431:110370...112997
NR annotation: KAJ7350968.1, hypothetical protein OS493_037502 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55C17	Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum OX=44689 GN=gpsn2 PE=3 SV=1
Q9N5Y2	Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans OX=6239 GN=art-1 PE=3 SV=1
Q64232	Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus OX=10116 GN=Tecr PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010899 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02544 all species →	Steroid_dh	3-oxo-5-alpha-steroid 4-dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001104 all species →	Domain	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	Interproscan
IPR039357 all species →	Family	3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10556 all species →	3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12343	SRD5A1; 3-oxo-5-alpha-steroid 4-dehydrogenase 1	EC:1.3.1.22	Steroid hormone biosynthesis	ko00140	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037502-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

7.9Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.49	3.78
polyp at pH7 6	18	13	1.49	5.94
coral polyp · control treatment	16	16	3.07	5.22
coral polyp · oil and dispersant treatment	16	15	2.85	7.90
coral polyp · oil treatment	16	16	2.29	5.24
coral polyp · dispersant treatment	16	15	2.89	4.77
Polyp	10	9	1.05	2.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.