Gene detail

Detailed information of OS493_037559-T1 in Lophelia pertusa

Genomic Location: scaffold_435:177009...179574
NR annotation: KAJ7376007.1, hypothetical protein OS493_037559 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001211 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species

Pfam domain

No Pfam domain signature was detected for OS493_037559-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042411 all species →	Family	WD repeat-containing protein 27	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44525 all species →	WD REPEAT-CONTAINING PROTEIN 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14830	MAK11, PAK1IP1; protein MAK11	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037559-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

11.5Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.40	3.55
polyp at pH7 6	18	13	0.98	2.97
coral polyp · control treatment	16	16	3.95	11.46
coral polyp · oil and dispersant treatment	16	16	2.51	5.66
coral polyp · oil treatment	16	16	2.64	5.53
coral polyp · dispersant treatment	16	16	1.66	4.59
Polyp	10	8	1.21	4.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.