Gene detail

Detailed information of OS493_037571-T1 in Lophelia pertusa

Genomic Location: scaffold_436:103830...107985
NR annotation: KAJ7369621.1, ion transmembrane transport [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N2C7	Protein unc-80 homolog OS=Homo sapiens OX=9606 GN=UNC80 PE=1 SV=2
Q8BLN6	Protein unc-80 homolog OS=Mus musculus OX=10090 GN=Unc80 PE=1 SV=3
Q9VB11	Protein unc-80 homolog OS=Drosophila melanogaster OX=7227 GN=unc80 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001978 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20262 all species →	UNC80_C	Protein UNC80 C-terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046460 all species →	Domain	Protein UNC80, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31781 all species →	UNC80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0034703 all species →	Cellular Component	cation channel complex	Interproscan
GO:0055080 all species →	Biological Process	monoatomic cation homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037571-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037571-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

22.9Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.13	13.75
polyp at pH7 6	18	16	7.06	12.70
coral polyp · control treatment	16	16	9.34	17.91
coral polyp · oil and dispersant treatment	16	16	8.30	22.85
coral polyp · oil treatment	16	16	8.24	17.61
coral polyp · dispersant treatment	16	15	8.73	15.72
Polyp	10	8	2.56	7.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.