Gene detail

Detailed information of OS493_037593-T1 in Lophelia pertusa

Genomic Location: scaffold_439:2545...6919
NR annotation: KAJ7388432.1, hypothetical protein OS493_037593 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R918	Kinesin-like protein KIF25 OS=Macaca fascicularis OX=9541 GN=KIF25 PE=1 SV=1
P17119	Kinesin-like protein KAR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KAR3 PE=1 SV=1
Q2QM62	Kinesin-like protein KIN-14R OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14R PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006437 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16796 all species →	Microtub_bd	Microtubule binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR031852 all species →	Domain	Spindle pole body-associated protein Vik1/Cik1, microtubule binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47972 all species →	KINESIN-LIKE PROTEIN KLP-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037593-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037593-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.4Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.70	16.73
polyp at pH7 6	18	16	6.64	10.59
coral polyp · control treatment	16	16	7.13	11.16
coral polyp · oil and dispersant treatment	16	16	6.00	12.86
coral polyp · oil treatment	16	16	9.84	20.36
coral polyp · dispersant treatment	16	16	5.80	11.81
Polyp	10	9	3.13	7.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.