Gene detail

Detailed information of OS493_037622-T1 in Lophelia pertusa

Genomic Location: scaffold_440:120141...121754
NR annotation: KAJ7382033.1, hypothetical protein OS493_037622 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R5Y0	Cilia- and flagella-associated protein 68 OS=Macaca fascicularis OX=9541 GN=CFAP68 PE=2 SV=1
Q9D131	Cilia- and flagella-associated protein 68 OS=Mus musculus OX=10090 GN=Cfap68 PE=1 SV=1
Q9H5F2	Cilia- and flagella-associated protein 68 OS=Homo sapiens OX=9606 GN=CFAP68 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006225 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06608 all species →	DUF1143	Protein of unknown function (DUF1143)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009524 all species →	Family	Cilia- and flagella-associated protein 68	Interproscan
IPR037662 all species →	Family	Cilia- and flagella-associated protein 68/107	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31180 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037622-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037622-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

24.5Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	3.16	9.75
polyp at pH7 6	18	13	3.12	12.90
coral polyp · control treatment	16	16	5.91	24.53
coral polyp · oil and dispersant treatment	16	13	2.95	6.56
coral polyp · oil treatment	16	16	4.43	9.66
coral polyp · dispersant treatment	16	16	3.85	8.36
Polyp	10	9	5.95	15.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.