Gene detail

Detailed information of OS493_037666-T1 in Lophelia pertusa

Genomic Location: scaffold_447:54671...55229
NR annotation: KAJ7375971.1, hypothetical protein OS493_037666 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009561 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11901 all species →	DM9	DM9 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006616 all species →	Repeat	DM9 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31649 all species →	AGAP009604-PA	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_037666-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037666-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037666-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

118.4Max TPM

35.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.53	58.02
polyp at pH7 6	18	18	26.42	51.96
coral polyp · control treatment	16	16	49.24	104.60
coral polyp · oil and dispersant treatment	16	15	40.17	98.85
coral polyp · oil treatment	16	16	42.20	118.36
coral polyp · dispersant treatment	16	16	33.30	68.10
Polyp	10	10	21.35	70.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.75
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.72
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	70.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	20.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.55

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.