Gene detail

Detailed information of OS493_037687-T1 in Lophelia pertusa

Genomic Location: scaffold_449:10035...14235
NR annotation: KAJ7350224.1, mannoprotein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RS11	Histone PARylation factor 1 OS=Nematostella vectensis OX=45351 GN=HPF1 PE=1 SV=1
Q9NWY4	Histone PARylation factor 1 OS=Homo sapiens OX=9606 GN=HPF1 PE=1 SV=2
A2VDY4	Histone PARylation factor 1 OS=Bos taurus OX=9913 GN=HPF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10228 all species →	HPF1	Histone PARylation factor 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019361 all species →	Family	Histone PARylation factor 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13386 all species →	HISTONE PARYLATION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0010835 all species →	Biological Process	regulation of protein ADP-ribosylation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0072572 all species →	Molecular Function	poly-ADP-D-ribose binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037687-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037687-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

44.4Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.39	10.84
polyp at pH7 6	18	17	6.18	9.63
coral polyp · control treatment	16	16	5.96	44.36
coral polyp · oil and dispersant treatment	16	15	4.24	39.80
coral polyp · oil treatment	16	16	3.38	8.75
coral polyp · dispersant treatment	16	16	2.45	5.42
Polyp	10	9	6.15	13.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.