Detailed information of OS493_037688-T1 in Lophelia pertusa

Genomic Location: scaffold_449:19787...22456
NR annotation: KAJ7350225.1, Homeobox protein Hox-A9 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P10179Homeobox protein HB4 (Fragment) OS=Tripneustes gratilla OX=7673 PE=3 SV=1
Q9PWD5Homeobox protein Hox-A9 OS=Morone saxatilis OX=34816 GN=hoxa9 PE=3 SV=1
P31247Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 GN=hoxb3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000082 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45664
all species →		PROTEIN ZERKNUELLT 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009952
all species →		Biological Processanterior/posterior pattern specificationInterproscan
GO:0048704
all species →		Biological Processembryonic skeletal system morphogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_037688-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_037688-T1 global co-expression network
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