Gene detail

Detailed information of OS493_037690-T1 in Lophelia pertusa

Genomic Location: scaffold_449:51410...56463
NR annotation: KAJ7350227.1, hypothetical protein OS493_037690 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZV5	Proteasome maturation protein OS=Bos taurus OX=9913 GN=POMP PE=2 SV=1
Q9Y244	Proteasome maturation protein OS=Homo sapiens OX=9606 GN=POMP PE=1 SV=1
Q5R9L9	Proteasome maturation protein OS=Pongo abelii OX=9601 GN=POMP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007747 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05348 all species →	UMP1	Proteasome maturation factor UMP1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008012 all species →	Family	Proteasome maturation factor Ump1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12828 all species →	PROTEASOME MATURATION PROTEIN UMP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043248 all species →	Biological Process	proteasome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11599	POMP, UMP1; proteasome maturation protein	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037690-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

370.0Max TPM

149.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	115.65	182.26
polyp at pH7 6	18	18	143.47	189.47
coral polyp · control treatment	16	16	138.73	214.29
coral polyp · oil and dispersant treatment	16	16	243.35	370.02
coral polyp · oil treatment	16	16	127.42	183.19
coral polyp · dispersant treatment	16	16	113.57	248.40
Polyp	10	10	175.88	279.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	182.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	174.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	126.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	189.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	184.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	176.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	170.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	124.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	112.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	107.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	214.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	210.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	181.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	176.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	140.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	370.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	361.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	296.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	262.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	252.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	242.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	241.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	240.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	213.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	204.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	195.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	176.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	156.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	183.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	178.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	165.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	136.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	248.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	157.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	279.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	279.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	266.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	226.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	172.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	157.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	140.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	101.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	79.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	55.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.