Gene detail

Detailed information of OS493_037720-T1 in Lophelia pertusa

Genomic Location: scaffold_454:7350...12788
NR annotation: KAJ7369594.1, adenylate cyclase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q03154	Aminoacylase-1 OS=Homo sapiens OX=9606 GN=ACY1 PE=1 SV=1
Q5RFB0	Aminoacylase-1 OS=Pongo abelii OX=9601 GN=ACY1 PE=2 SV=2
Q6PTT0	Aminoacylase-1B OS=Rattus norvegicus OX=10116 GN=Acy1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008516 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002933 all species →	Family	Peptidase M20	Interproscan
IPR052083 all species →	Family	Aminoacylase-1 peptidase M20A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45892 all species →	AMINOACYLASE-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004046 all species →	Molecular Function	aminoacylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037720-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037720-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

71.5Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.18	21.71
polyp at pH7 6	18	16	10.67	14.92
coral polyp · control treatment	16	16	20.80	71.47
coral polyp · oil and dispersant treatment	16	16	14.70	58.14
coral polyp · oil treatment	16	16	14.93	33.39
coral polyp · dispersant treatment	16	16	13.75	24.89
Polyp	10	9	11.13	22.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.