Gene detail

Detailed information of OS493_037750-T1 in Lophelia pertusa

Genomic Location: scaffold_456:68215...71578
NR annotation: KAJ7318634.1, hypothetical protein OS493_037750 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TXJ7	Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2983C PE=3 SV=1
A1KMV3	Rhamnosyl O-methyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=BCG_2980c PE=3 SV=1
A5U6W7	Rhamnosyl O-methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) OX=419947 GN=MRA_2986 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04989 all species →	RMNT_CmcI	Rhamnosyl O-methyltransferase/CmcI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007072 all species →	Family	Rhamnosyl O-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40048 all species →	RHAMNOSYL O-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0071770 all species →	Biological Process	DIM/DIP cell wall layer assembly	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037750-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037750-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

239.0Max TPM

46.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	56.83	102.40
polyp at pH7 6	18	18	36.93	68.25
coral polyp · control treatment	16	16	49.61	116.93
coral polyp · oil and dispersant treatment	16	16	23.05	79.97
coral polyp · oil treatment	16	16	35.29	117.43
coral polyp · dispersant treatment	16	16	33.99	73.89
Polyp	10	10	112.34	239.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.38
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	239.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	182.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	171.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	135.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	122.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	97.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	63.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	49.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	36.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.