Gene detail

Detailed information of OS493_037804-T1 in Lophelia pertusa

Genomic Location: scaffold_463:123559...125847
NR annotation: KAJ7388412.1, neurexin protein binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NFZ4	Neuroligin-2 OS=Homo sapiens OX=9606 GN=NLGN2 PE=1 SV=1
Q69ZK9	Neuroligin-2 OS=Mus musculus OX=10090 GN=Nlgn2 PE=1 SV=2
Q62888	Neuroligin-2 OS=Rattus norvegicus OX=10116 GN=Nlgn2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000180 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR051093 all species →	Family	Neuroligin and Bile salt-activated lipase	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43903 all species →	NEUROLIGIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007158 all species →	Biological Process	neuron cell-cell adhesion	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0048488 all species →	Biological Process	synaptic vesicle endocytosis	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0097104 all species →	Biological Process	postsynaptic membrane assembly	Interproscan
GO:0097105 all species →	Biological Process	presynaptic membrane assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26544	SEC14, SEC14L; phosphatidylinositol/phosphatidylcholine transfer protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037804-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

396.6Max TPM

99.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	71.63	108.35
polyp at pH7 6	18	18	86.98	144.60
coral polyp · control treatment	16	16	88.13	221.32
coral polyp · oil and dispersant treatment	16	16	175.53	396.62
coral polyp · oil treatment	16	16	111.30	256.68
coral polyp · dispersant treatment	16	16	78.99	242.11
Polyp	10	10	84.09	225.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	144.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.36
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	396.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	331.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	320.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	203.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	202.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	256.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	220.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	205.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	145.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	242.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	186.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	225.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	154.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	110.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	80.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	62.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	61.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.