Gene detail

Detailed information of OS493_037811-T1 in Lophelia pertusa

Genomic Location: scaffold_464:31172...35705
NR annotation: KAJ7381986.1, ATP synthase subunit delta, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D3D9	ATP synthase F(1) complex subunit delta, mitochondrial OS=Mus musculus OX=10090 GN=Atp5f1d PE=1 SV=1
P05630	ATP synthase F(1) complex subunit delta, mitochondrial OS=Bos taurus OX=9913 GN=ATP5F1D PE=1 SV=2
P35434	ATP synthase F(1) complex subunit delta, mitochondrial OS=Rattus norvegicus OX=10116 GN=Atp5f1d PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02823 all species →	ATP-synt_DE_N	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036771 all species →	Homologous_superfamily	F0F1 ATP synthase delta/epsilon subunit, N-terminal	Interproscan
IPR001469 all species →	Family	ATP synthase, F1 complex, delta/epsilon subunit	Interproscan
IPR020546 all species →	Domain	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13822 all species →	ATP SYNTHASE DELTA/EPSILON CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0000275 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02134	ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037811-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

821.1Max TPM

149.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	158.59	199.32
polyp at pH7 6	18	18	157.05	181.16
coral polyp · control treatment	16	16	173.16	715.20
coral polyp · oil and dispersant treatment	16	16	156.10	821.07
coral polyp · oil treatment	16	16	145.56	174.12
coral polyp · dispersant treatment	16	16	86.81	145.20
Polyp	10	10	174.98	253.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	199.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	188.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	186.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	177.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	174.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	170.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	142.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	139.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	138.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	181.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	176.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	175.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	175.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	171.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	161.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	160.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	157.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	151.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	149.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	143.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	131.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	715.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	151.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	140.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	132.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	821.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	174.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	173.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	171.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	169.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	161.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	150.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	134.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	131.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	116.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.07
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	253.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	196.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	195.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	176.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	173.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	169.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	165.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	147.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	146.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	124.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.