Gene detail

Detailed information of OS493_037812-T1 in Lophelia pertusa

Genomic Location: scaffold_464:35870...51672
NR annotation: KAJ7381987.1, hypothetical protein OS493_037812 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P06132	Uroporphyrinogen decarboxylase OS=Homo sapiens OX=9606 GN=UROD PE=1 SV=2
P70697	Uroporphyrinogen decarboxylase OS=Mus musculus OX=10090 GN=Urod PE=1 SV=2
Q8HY31	Uroporphyrinogen decarboxylase OS=Ovis aries OX=9940 GN=UROD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01208 all species →	URO-D	Uroporphyrinogen decarboxylase (URO-D)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038071 all species →	Homologous_superfamily	UROD/MetE-like superfamily	Interproscan
IPR000257 all species →	Domain	Uroporphyrinogen decarboxylase (URO-D)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21091 all species →	METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004853 all species →	Molecular Function	uroporphyrinogen decarboxylase activity	Interproscan
GO:0006779 all species →	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037812-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037812-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

18.3Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.29	9.47
polyp at pH7 6	18	17	6.05	9.55
coral polyp · control treatment	16	16	9.26	16.25
coral polyp · oil and dispersant treatment	16	16	7.44	18.31
coral polyp · oil treatment	16	16	8.25	12.73
coral polyp · dispersant treatment	16	16	8.46	15.58
Polyp	10	9	5.24	9.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.77
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.