Gene detail

Detailed information of OS493_037823-T1 in Lophelia pertusa

Genomic Location: scaffold_464:106475...106966
NR annotation: KAJ7381998.1, hypothetical protein OS493_037823 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000938 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR052591 all species →	Family	Calcium-Dependent Signaling Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23064 all species →	TROPONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037823-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037823-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

356.6Max TPM

27.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	0.35	0.95
polyp at pH7 6	18	17	1.27	4.37
coral polyp · control treatment	16	15	10.62	80.12
coral polyp · oil and dispersant treatment	16	16	66.92	356.59
coral polyp · oil treatment	16	16	17.02	95.27
coral polyp · dispersant treatment	16	16	92.69	309.07
Polyp	10	9	3.11	21.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	220.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	309.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	288.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.