Gene detail

Detailed information of OS493_037854-T1 in Lophelia pertusa

Genomic Location: scaffold_470:41977...42465
NR annotation: KAJ7381976.1, steroid binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003269 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR050577 all species →	Family	Cytochrome b5/MAPR and VMP1 families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10281 all species →	MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037854-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037854-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

194.2Max TPM

37.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.54	34.74
polyp at pH7 6	18	18	14.86	23.96
coral polyp · control treatment	16	16	40.57	105.01
coral polyp · oil and dispersant treatment	16	16	89.98	194.24
coral polyp · oil treatment	16	16	54.49	88.05
coral polyp · dispersant treatment	16	16	28.46	66.26
Polyp	10	10	18.86	56.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	194.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	110.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.90
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.30
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	56.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.09
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.