Gene detail

Detailed information of OS493_037869-T1 in Lophelia pertusa

Genomic Location: scaffold_471:99824...106266
NR annotation: KAJ7375954.1, hypothetical protein OS493_037869 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5BL29	Zinc transporter ZIP9 OS=Danio rerio OX=7955 GN=slc39a9 PE=2 SV=1
A0A3Q7ZPG5	Zinc transporter ZIP9 OS=Micropogonias undulatus OX=29154 GN=slc39a9 PE=1 SV=1
Q5RE57	Zinc transporter ZIP9 OS=Pongo abelii OX=9601 GN=SLC39A9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006011 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_037869-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR045891 all species →	Family	Zinc transporter ZIP9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16133 all species →	SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006829 all species →	Biological Process	zinc ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037869-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037869-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

78TPM > 0

7Conditions

24.9Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	2.27	5.20
polyp at pH7 6	18	12	2.41	5.86
coral polyp · control treatment	16	13	5.77	14.76
coral polyp · oil and dispersant treatment	16	12	7.36	24.94
coral polyp · oil treatment	16	12	5.26	14.79
coral polyp · dispersant treatment	16	10	3.98	9.95
Polyp	10	8	1.58	3.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.