Gene detail

Detailed information of OS493_037871-T1 in Lophelia pertusa

Genomic Location: scaffold_471:119121...127249
NR annotation: KAJ7375956.1, hypothetical protein OS493_037871 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NUM3	Zinc transporter ZIP9 OS=Homo sapiens OX=9606 GN=SLC39A9 PE=1 SV=2
Q8BFU1	Zinc transporter ZIP9 OS=Mus musculus OX=10090 GN=Slc39a9 PE=2 SV=1
A0A3Q7ZPG5	Zinc transporter ZIP9 OS=Micropogonias undulatus OX=29154 GN=slc39a9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02535 all species →	Zip	ZIP Zinc transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003689 all species →	Family	Zinc/iron permease	Interproscan
IPR045891 all species →	Family	Zinc transporter ZIP9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16133 all species →	SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030001 all species →	Biological Process	metal ion transport	Interproscan
GO:0046873 all species →	Molecular Function	metal ion transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0006829 all species →	Biological Process	zinc ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14715	SLC39A9, ZIP9; solute carrier family 39 (zinc transporter), member 9	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037871-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

20.6Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.56	9.75
polyp at pH7 6	18	16	6.12	9.10
coral polyp · control treatment	16	16	13.45	19.80
coral polyp · oil and dispersant treatment	16	16	13.42	18.11
coral polyp · oil treatment	16	16	12.56	20.62
coral polyp · dispersant treatment	16	16	8.97	19.48
Polyp	10	9	4.87	13.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.82
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.