Gene detail

Detailed information of OS493_037975-T1 in Lophelia pertusa

Genomic Location: scaffold_487:41616...49399
NR annotation: KAJ7388382.1, Cytochrome c oxidase subunit 7A- protein, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008759 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_037975-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR003177 all species →	Family	Cytochrome c oxidase subunit VIIa, metazoa	Interproscan
IPR036539 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit VIIa superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10510 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE 7A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002082 all species →	Biological Process	regulation of oxidative phosphorylation	Interproscan
GO:0005746 all species →	Cellular Component	obsolete mitochondrial respirasome	Interproscan
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan
GO:0097250 all species →	Biological Process	mitochondrial respirasome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037975-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037975-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

461.1Max TPM

34.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.17	31.78
polyp at pH7 6	18	18	29.78	79.43
coral polyp · control treatment	16	16	53.45	461.09
coral polyp · oil and dispersant treatment	16	16	49.07	445.41
coral polyp · oil treatment	16	15	30.48	81.45
coral polyp · dispersant treatment	16	16	23.62	102.74
Polyp	10	10	36.97	72.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	461.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	445.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	53.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	50.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	33.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.