Gene detail

Detailed information of OS493_037976-T1 in Lophelia pertusa

Genomic Location: scaffold_487:51557...55725
NR annotation: KAJ7388383.1, Cytochrome c oxidase subunit 7A- protein, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008759 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_037976-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR003177 all species →	Family	Cytochrome c oxidase subunit VIIa, metazoa	Interproscan
IPR036539 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit VIIa superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10510 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE 7A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002082 all species →	Biological Process	regulation of oxidative phosphorylation	Interproscan
GO:0005746 all species →	Cellular Component	obsolete mitochondrial respirasome	Interproscan
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan
GO:0097250 all species →	Biological Process	mitochondrial respirasome assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_037976-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037976-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

536.3Max TPM

75.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.47	52.74
polyp at pH7 6	18	18	51.83	127.71
coral polyp · control treatment	16	16	124.04	536.30
coral polyp · oil and dispersant treatment	16	16	98.65	417.01
coral polyp · oil treatment	16	16	94.58	165.78
coral polyp · dispersant treatment	16	16	66.52	127.70
Polyp	10	10	52.62	125.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.04
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	112.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.72
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.94
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	536.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	129.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	123.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	417.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	165.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	138.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	125.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	76.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	63.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	56.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	55.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	37.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.