Gene detail

Detailed information of OS493_037991-T1 in Lophelia pertusa

Genomic Location: scaffold_489:71841...83462
NR annotation: KAJ7375926.1, hypothetical protein OS493_037991 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P8Y1	Calcyphosin-like protein OS=Mus musculus OX=10090 GN=Capsl PE=2 SV=4
Q8WWF8	Calcyphosin-like protein OS=Homo sapiens OX=9606 GN=CAPSL PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001669 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR051581 all species →	Family	Calcium-Binding Signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34524 all species →	CALCYPHOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23909	CAPS; calcyphosin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_037991-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

775.2Max TPM

236.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	236.37	350.78
polyp at pH7 6	18	18	248.47	358.79
coral polyp · control treatment	16	16	270.59	738.14
coral polyp · oil and dispersant treatment	16	16	271.33	775.21
coral polyp · oil treatment	16	16	223.14	442.37
coral polyp · dispersant treatment	16	16	209.36	426.44
Polyp	10	10	169.67	389.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	350.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	344.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	290.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	284.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	281.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	265.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	246.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	239.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	225.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	221.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	218.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	210.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	207.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	179.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.80
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	358.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	343.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	316.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	303.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	292.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	276.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	275.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	268.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	268.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	253.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	249.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	246.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	208.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	199.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	738.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	402.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	352.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	344.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	320.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	310.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	303.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	258.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	254.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	220.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	199.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	775.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	391.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	370.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	361.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	342.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	312.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	311.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	296.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	216.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	209.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	174.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	442.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	313.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	309.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	295.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	290.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	276.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	259.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	256.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	255.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	176.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	174.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	426.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	365.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	328.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	300.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	298.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	247.33
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	237.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	198.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	197.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	170.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	132.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	389.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	215.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	200.71
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	184.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	166.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	143.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	121.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	109.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	88.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	76.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.