Gene detail

Detailed information of OS493_038153-T1 in Lophelia pertusa

Genomic Location: scaffold_519:78787...85331
NR annotation: KAJ7375905.1, hypothetical protein OS493_038153 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008323 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15073 all species →	SPATA48	Spermatogenesis-associated protein 48	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027867 all species →	Family	Spermatogenesis-associated protein 48	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34759 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 48	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_038153-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038153-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038153-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

48.7Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.02	15.09
polyp at pH7 6	18	18	6.89	9.52
coral polyp · control treatment	16	16	14.46	48.74
coral polyp · oil and dispersant treatment	16	16	12.22	25.47
coral polyp · oil treatment	16	16	12.15	19.38
coral polyp · dispersant treatment	16	16	13.94	27.44
Polyp	10	9	5.04	10.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.