Gene detail

Detailed information of OS493_038160-T1 in Lophelia pertusa

Genomic Location: scaffold_521:5825...15960
NR annotation: KAJ7350150.1, spindle assembly [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68CZ6	HAUS augmin-like complex subunit 3 OS=Homo sapiens OX=9606 GN=HAUS3 PE=1 SV=1
Q8QZX2	HAUS augmin-like complex subunit 3 OS=Mus musculus OX=10090 GN=Haus3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14932 all species →	HAUS-augmin3	HAUS augmin-like complex subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026206 all species →	Family	HAUS augmin-like complex subunit 3	Interproscan
IPR032733 all species →	Domain	HAUS augmin-like complex subunit 3, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19378 all species →	GOLGIN- RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007098 all species →	Biological Process	centrosome cycle	Interproscan
GO:0051225 all species →	Biological Process	spindle assembly	Interproscan
GO:0070652 all species →	Cellular Component	HAUS complex	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038160-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038160-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

29.4Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.08	7.98
polyp at pH7 6	18	16	4.16	6.91
coral polyp · control treatment	16	16	5.20	26.79
coral polyp · oil and dispersant treatment	16	16	4.26	29.37
coral polyp · oil treatment	16	16	4.14	9.70
coral polyp · dispersant treatment	16	14	2.79	7.59
Polyp	10	8	4.50	11.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.