Gene detail

Detailed information of OS493_038271-T1 in Lophelia pertusa

Genomic Location: scaffold_545:27363...35796
NR annotation: KAJ7350138.1, hypothetical protein OS493_038271 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000521 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00341 all species →	PDGF	PDGF/VEGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008197 all species →	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR000072 all species →	Domain	PDGF/VEGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633 all species →	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0031954 all species →	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851 all species →	Molecular Function	growth factor receptor binding	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05449	VEGFC_D; vascular endothelial growth factor C/D	-	Cytokines and neuropeptides	ko04052	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_038271-T1 global co-expression network