Gene detail

Detailed information of OS493_038310-T1 in Lophelia pertusa

Genomic Location: scaffold_550:29781...45030
NR annotation: KAJ7369529.1, hypothetical protein OS493_038310 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1RKQ4	Triokinase/FMN cyclase OS=Sus scrofa OX=9823 GN=TKFC PE=1 SV=2
Q3LXA3	Triokinase/FMN cyclase OS=Homo sapiens OX=9606 GN=TKFC PE=1 SV=2
Q58DK4	Triokinase/FMN cyclase OS=Bos taurus OX=9913 GN=TKFC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02733 all species →	Dak1	Dak1 domain	Family	Interproscan
PF02734 all species →	Dak2	DAK2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004006 all species →	Domain	DhaK domain	Interproscan
IPR050861 all species →	Family	Dihydroxyacetone Kinase (DAK)	Interproscan
IPR036117 all species →	Homologous_superfamily	DhaL domain superfamily	Interproscan
IPR004007 all species →	Domain	DhaL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28629 all species →	TRIOKINASE/FMN CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004371 all species →	Molecular Function	glycerone kinase activity	Interproscan
GO:0006071 all species →	Biological Process	glycerol metabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019563 all species →	Biological Process	glycerol catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00863	DAK, TKFC; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing)	EC:2.7.1.28 EC:2.7.1.29 EC:4.6.1.15	RIG-I-like receptor signaling pathway	ko04622	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038310-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

9.8Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.72	6.33
polyp at pH7 6	18	17	3.86	9.76
coral polyp · control treatment	16	16	3.92	7.28
coral polyp · oil and dispersant treatment	16	16	2.94	6.04
coral polyp · oil treatment	16	16	4.06	7.89
coral polyp · dispersant treatment	16	16	3.20	5.59
Polyp	10	9	1.90	5.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.