Gene detail

Detailed information of OS493_038311-T1 in Lophelia pertusa

Genomic Location: scaffold_550:47966...58034
NR annotation: KAJ7369530.1, hypothetical protein OS493_038311 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3LXA3	Triokinase/FMN cyclase OS=Homo sapiens OX=9606 GN=TKFC PE=1 SV=2
F1RKQ4	Triokinase/FMN cyclase OS=Sus scrofa OX=9823 GN=TKFC PE=1 SV=2
Q58DK4	Triokinase/FMN cyclase OS=Bos taurus OX=9913 GN=TKFC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02733 all species →	Dak1	Dak1 domain	Family	Interproscan
PF02734 all species →	Dak2	DAK2 domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050861 all species →	Family	Dihydroxyacetone Kinase (DAK)	Interproscan
IPR036117 all species →	Homologous_superfamily	DhaL domain superfamily	Interproscan
IPR004006 all species →	Domain	DhaK domain	Interproscan
IPR004007 all species →	Domain	DhaL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28629 all species →	TRIOKINASE/FMN CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004371 all species →	Molecular Function	glycerone kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019563 all species →	Biological Process	glycerol catabolic process	Interproscan
GO:0006071 all species →	Biological Process	glycerol metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038311-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038311-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

17.5Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.28	7.94
polyp at pH7 6	18	16	4.14	7.27
coral polyp · control treatment	16	16	6.16	10.65
coral polyp · oil and dispersant treatment	16	15	4.45	9.36
coral polyp · oil treatment	16	16	6.58	12.94
coral polyp · dispersant treatment	16	16	5.38	17.47
Polyp	10	8	2.56	6.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.