Gene detail

Detailed information of OS493_038406-T1 in Lophelia pertusa

Genomic Location: scaffold_575:57121...58200
NR annotation: KAJ7350120.1, hypothetical protein OS493_038406 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00443	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha OS=Homo sapiens OX=9606 GN=PIK3C2A PE=1 SV=2
Q61194	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha OS=Mus musculus OX=10090 GN=Pik3c2a PE=1 SV=2
Q5RAY1	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha OS=Pongo abelii OX=9601 GN=PIK3C2A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007588 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038406-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038406-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

15.2Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.26	8.64
polyp at pH7 6	18	18	4.59	8.40
coral polyp · control treatment	16	16	7.78	13.96
coral polyp · oil and dispersant treatment	16	16	7.79	15.16
coral polyp · oil treatment	16	16	5.83	9.77
coral polyp · dispersant treatment	16	14	2.25	4.83
Polyp	10	10	2.46	4.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.91
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.65

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.