Gene detail

Detailed information of OS493_038408-T1 in Lophelia pertusa

Genomic Location: scaffold_576:1098...10642
NR annotation: KAJ7315654.1, hypothetical protein OS493_038408, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LMG7	Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=PAP2 PE=2 SV=1
Q9ZQ81	Probable inactive purple acid phosphatase 9 OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=2 SV=1
Q9LXI7	Probable purple acid phosphatase 20 OS=Arabidopsis thaliana OX=3702 GN=PAP20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001443 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14008 all species →	Metallophos_C	Iron/zinc purple acid phosphatase-like protein C	Domain	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR025733 all species →	Domain	Iron/zinc purple acid phosphatase-like C-terminal domain	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45778 all species →	PURPLE ACID PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038408-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038408-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.7Max TPM

14.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.88	24.92
polyp at pH7 6	18	18	14.31	25.17
coral polyp · control treatment	16	16	15.13	30.67
coral polyp · oil and dispersant treatment	16	16	17.47	25.25
coral polyp · oil treatment	16	16	14.95	27.89
coral polyp · dispersant treatment	16	16	9.87	16.31
Polyp	10	10	10.52	15.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.06
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.17

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.