Gene detail

Detailed information of OS493_038417-T1 in Lophelia pertusa

Genomic Location: scaffold_576:48216...52338
NR annotation: KAJ7315662.1, hypothetical protein OS493_038417 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LMG7	Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=PAP2 PE=2 SV=1
Q9ZQ81	Probable inactive purple acid phosphatase 9 OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=2 SV=1
Q9LMX4	Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana OX=3702 GN=PAP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001443 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14008 all species →	Metallophos_C	Iron/zinc purple acid phosphatase-like protein C	Domain	Interproscan
PF16656 all species →	Pur_ac_phosph_N	Purple acid Phosphatase, N-terminal domain	Domain	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025733 all species →	Domain	Iron/zinc purple acid phosphatase-like C-terminal domain	Interproscan
IPR015914 all species →	Domain	Purple acid phosphatase, N-terminal	Interproscan
IPR008963 all species →	Homologous_superfamily	Purple acid phosphatase-like, N-terminal	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR041792 all species →	Domain	Purple acid phosphatase, metallophosphatase domain	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45778 all species →	PURPLE ACID PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22390	ACP7; acid phosphatase type 7	-	Others	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038417-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.5Max TPM

7.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.07	12.91
polyp at pH7 6	18	18	9.38	12.82
coral polyp · control treatment	16	16	6.70	15.24
coral polyp · oil and dispersant treatment	16	16	3.57	11.58
coral polyp · oil treatment	16	16	6.84	13.39
coral polyp · dispersant treatment	16	16	4.19	15.50
Polyp	10	10	7.43	11.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.25
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.