Gene detail

Detailed information of OS493_038418-T1 in Lophelia pertusa

Genomic Location: scaffold_576:56116...69003
NR annotation: KAJ7315663.1, hypothetical protein OS493_038418, partial [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_038418-T1

ATGGCGACGACAAAAACTGCTCTTGTTGCTTCCTTGTATATTTTGTGGGTTACTGGCATAAATTGCAAACACGACCATCCAGTTCCAACTTATTTCGGTCGAGTGCATCCTAATGGTACCATCGTGGATGCTCGAAACCCGGCAAACAAGCTGAAGTTTTCCTCCCCACCAAAACCGACAACACTCGAGCCGATAGCTTCGTTGAAGGTTTCACCATCATCAGAGATCGGTAATGGCGAACAAGTGAACGTTTCATGGTCCGGGGTAACTTTTCCAAGTGACAAAGATATCGTAGTTCTCTATTGCCCTCCAGACGCGGAGTTCGATCATTATTTGGATTATGTTAAAGTCAGTAGCATAGAGACTTACACGAAAGGTTATGGCGAGTTTGACGTTCAACTGTGGAATTTGAGGAAAGAATGCCAGTTCAGATATTACAGAATGGGCAATTACACAACGCTTGTTACAGAAAGCAACGTTGTGACTTTTGAAGGAGGGGCGGAGATTCCATTGCAAGGTCATCTATCTCTTACAGGGGACCCTACGGAAATGAGAGTTATGTGGGTATCCGGTTCAATGGAAATTCCCATTGTTCAATACGGGACTGACCCATCGACCATGTCTGTTGTGCAAGGAACCAACAGTAAAACATACACTGCTGCAGACATGTGTAACGCACCTGCTAATGAAGAAAATGCCTTTATTGATCCTGGCTTTATTCATGATGTTTTGTTGACAAACCTCAAGCCAGGAAACCTTTATTACTACTCTTATGGCTCAGTGAAGATGATGAGTCCTCTTCGCCATTTCAACACATCTCCACCTGTTGGTTCAGCAAATAAGTTTACTGCCCTAGTGTATGGAGACATGGGAGTATCACCTGTACCACGGGCATACAAGACAGCAGAATATGCACTAGAAGAAGCTATGAATGGAACCGCAGCATTTGTCTTTCACAATGGTGATCTTTCTTATGCTGTGGGACATTCCTACATTTGGGAGCAGTGGCATGCAGTAGTTGAACCATATGCTACCATCCTTCCATATATGGTGGGCATTGGAAACCATGAACAGGACCACATAAAGGGAGGTTCCAAGGACCCCAGTGGGGCGCCTGGAGAGGGCTTCCATCCATGGTGGGCTAAGCCATTATATGGGTCAGATTCTGGTGGCGAATGTGGGGTGCCAATGTATTACCGTTTCCACATGCCCGATAATGGAAATGCAGTTTGGTGGTACAGCTTTGATTATGGCAGTGTCCACTTCATGATGATGAGCACAGAGCATAACTTCACACAAGGGTCTCGTCAGCATGAATGGATGGAACAGGACTTGAAGAATGTCGACCGCACTCTCACCCCCTGGGTCGTGATTGCAGGTCACAGACCCATGTACACAAGTCAAAAGATACTAGGCGACTACACTGTCTCGCTGGGCATGCAGGAGGCGTTTGAGTCGCTGTTATATAAATACAAGTTACGAGCGGACATGCCCTGTGTACCTGCAGCAATGCACCCCAGGGCCCCAGTGCATATCGTAGTAGGGACCGCAGGCAAGGATTTGGATATGCCAGACAGTTATTTCCCAATGAGCTGGTCGTTGTATCATGAGGTTAACTTTGGATATGGAAGGTTGACTCAAGCAAGCCGTTCCGCGCTGCACTGGGAATGGGTTGAGAATACCAGTGGATTCGTTAGGATCACTTGTGATAACGCTACACTGAAGGTCACTCCGAGCTTGGTGGAAAACGGGGCTACTGTGAACGTGTCATGGAGTGGAATACCACGGCCCAACAAGACGGACTTCATCGCGTTTTACTGCCCAGAAAATGATCAATCCGATCATTATCTGGACTACTTTTACGTCACGGAATCGGCGAGTTATGCTTCTGAGTACGGCTGGAATCAGGTCGCAGTATACAACATGAGAACCAGCTGCCAGTTCCGTATTATCAGAAGAGTTACATTCACGTGGCCACCAGTAATTTGCTGGAGTTTAAGGGAGGAATTGATGTTCCTTTACAAGGACATATCGCTCTTACGGGCGGATCCCTCGCAGATGAGAGTTATGTGGGTATCGGGCACAGATGATCCTCCAGTTGTGCACTATGGAAAAGACTCTTCGTTGCATTCCACGGCTACAGGAACCTCGAAAACGTACCAAAAGAGCTCCAG

Transcript

OS493_038418-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LMG7	Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=PAP2 PE=2 SV=1
Q9ZQ81	Probable inactive purple acid phosphatase 9 OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=2 SV=1
Q9LXI7	Probable purple acid phosphatase 20 OS=Arabidopsis thaliana OX=3702 GN=PAP20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001443 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF16656 all species →	Pur_ac_phosph_N	Purple acid Phosphatase, N-terminal domain	Domain	Interproscan
PF14008 all species →	Metallophos_C	Iron/zinc purple acid phosphatase-like protein C	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR008963 all species →	Homologous_superfamily	Purple acid phosphatase-like, N-terminal	Interproscan
IPR015914 all species →	Domain	Purple acid phosphatase, N-terminal	Interproscan
IPR025733 all species →	Domain	Iron/zinc purple acid phosphatase-like C-terminal domain	Interproscan
IPR041792 all species →	Domain	Purple acid phosphatase, metallophosphatase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45778 all species →	PURPLE ACID PHOSPHATASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_038418-T1 global co-expression network