Gene detail

Detailed information of OS493_038437-T1 in Lophelia pertusa

Genomic Location: scaffold_581:57192...57509
NR annotation: KAJ7350104.1, hypothetical protein OS493_038437 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000219 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_038437-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR007842 all species →	Domain	HEPN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46919 all species →	ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_038437-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038437-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038437-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

78TPM > 0

7Conditions

35.4Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	3.10	8.12
polyp at pH7 6	18	7	1.67	6.64
coral polyp · control treatment	16	14	8.18	29.17
coral polyp · oil and dispersant treatment	16	11	4.81	22.35
coral polyp · oil treatment	16	14	9.15	35.43
coral polyp · dispersant treatment	16	12	2.67	11.86
Polyp	10	7	5.26	16.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.