Gene detail

Detailed information of OS493_038495-T1 in Lophelia pertusa

Genomic Location: scaffold_601:50031...57014
NR annotation: KAJ7388323.1, hypothetical protein OS493_038495 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O80983	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH4 PE=1 SV=2
Q8LQJ8	ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH5 PE=3 SV=1
Q8LQJ9	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23076 all species →	METALLOPROTEASE M41 FTSH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11176	purO; IMP cyclohydrolase	EC:3.5.4.10	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038495-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

85.8Max TPM

17.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	7.99	13.56
polyp at pH7 6	18	14	11.03	19.24
coral polyp · control treatment	16	16	24.15	85.82
coral polyp · oil and dispersant treatment	16	16	33.32	68.69
coral polyp · oil treatment	16	16	17.17	47.92
coral polyp · dispersant treatment	16	15	22.54	49.41
Polyp	10	9	6.49	13.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.