Gene detail

Detailed information of OS493_038497-T1 in Lophelia pertusa

Genomic Location: scaffold_602:6191...7924
NR annotation: KAJ7381883.1, Inositol-3-phosphate synthase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDT1	Inositol-3-phosphate synthase 1-B OS=Xenopus laevis OX=8355 GN=isyna1-b PE=2 SV=2
Q7ZXY0	Inositol-3-phosphate synthase 1-A OS=Xenopus laevis OX=8355 GN=isyna1-a PE=2 SV=1
Q9FPK7	Inositol-3-phosphate synthase OS=Zea mays OX=4577 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01658 all species →	Inos-1-P_synth	Myo-inositol-1-phosphate synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013021 all species →	Domain	Myo-inositol-1-phosphate synthase, GAPDH-like	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002587 all species →	Family	Myo-inositol-1-phosphate synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11510 all species →	MYO-INOSITOL-1 PHOSPHATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004512 all species →	Molecular Function	inositol-3-phosphate synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006021 all species →	Biological Process	inositol biosynthetic process	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038497-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038497-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

31.0Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.95	11.76
polyp at pH7 6	18	15	7.00	16.15
coral polyp · control treatment	16	16	11.08	20.76
coral polyp · oil and dispersant treatment	16	15	11.26	22.80
coral polyp · oil treatment	16	16	7.44	13.92
coral polyp · dispersant treatment	16	16	13.17	30.99
Polyp	10	8	6.08	22.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.