Gene detail

Detailed information of OS493_038590-T1 in Lophelia pertusa

Genomic Location: scaffold_641:7622...8285
NR annotation: KAJ7349551.1, hypothetical protein OS493_038590 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000367 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for OS493_038590-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038590-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038590-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

92TPM > 0

7Conditions

17.7Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.94	14.54
polyp at pH7 6	18	17	5.41	13.91
coral polyp · control treatment	16	13	5.81	15.49
coral polyp · oil and dispersant treatment	16	13	4.37	11.43
coral polyp · oil treatment	16	12	3.57	8.00
coral polyp · dispersant treatment	16	12	4.87	17.65
Polyp	10	9	4.72	10.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.45
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.