Gene detail

Detailed information of OS493_038616-T1 in Lophelia pertusa

Genomic Location: scaffold_647:47092...48634
NR annotation: KAJ7349549.1, hypothetical protein OS493_038616 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43861 all species →	TRANS-ACONITATE 2-METHYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038616-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038616-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

93.0Max TPM

37.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.96	89.85
polyp at pH7 6	18	18	45.18	87.52
coral polyp · control treatment	16	16	29.87	61.62
coral polyp · oil and dispersant treatment	16	16	36.33	55.72
coral polyp · oil treatment	16	16	52.84	92.95
coral polyp · dispersant treatment	16	16	14.32	35.41
Polyp	10	10	37.42	69.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	69.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	60.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	58.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	39.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.