Gene detail

Detailed information of OS493_038643-T1 in Lophelia pertusa

Genomic Location: scaffold_656:4476...7355
NR annotation: KAJ7381855.1, hypothetical protein OS493_038643, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95204	Transmembrane ascorbate-dependent reductase CYB561 OS=Ovis aries OX=9940 GN=CYB561 PE=2 SV=1
P10897	Transmembrane ascorbate-dependent reductase CYB561 OS=Bos taurus OX=9913 GN=CYB561 PE=1 SV=2
Q5CZL8	Plasma membrane ascorbate-dependent reductase CYBRD1 OS=Xenopus tropicalis OX=8364 GN=cybrd1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002761 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR043205 all species →	Family	Cytochrome b561/Cytochrome b reductase 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10106 all species →	CYTOCHROME B561-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08360	CYB561; transmembrane ascorbate-dependent reductase	EC:7.2.1.3	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038643-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

38.7Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.93	15.47
polyp at pH7 6	18	14	8.62	20.41
coral polyp · control treatment	16	16	15.73	29.80
coral polyp · oil and dispersant treatment	16	16	12.57	31.70
coral polyp · oil treatment	16	16	13.95	38.67
coral polyp · dispersant treatment	16	16	15.15	29.49
Polyp	10	9	6.77	11.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.16
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.23
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.