Gene detail

Detailed information of OS493_038679-T1 in Lophelia pertusa

Genomic Location: scaffold_674:15303...21135
NR annotation: KAJ7381848.1, Ribonuclease P protein subunit p38 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P78345	Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2
Q80UU2	Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1
Q32LC1	Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007993 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR042848 all species →	Family	Ribonuclease P protein subunit Rpp38	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46948 all species →	RIBONUCLEASE P PROTEIN SUBUNIT P38	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000172 all species →	Cellular Component	ribonuclease MRP complex	Interproscan
GO:0001650 all species →	Cellular Component	fibrillar center	Interproscan
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0004526 all species →	Molecular Function	ribonuclease P activity	Interproscan
GO:0005655 all species →	Cellular Component	nucleolar ribonuclease P complex	Interproscan
GO:0030681 all species →	Cellular Component	multimeric ribonuclease P complex	Interproscan
GO:0033204 all species →	Molecular Function	ribonuclease P RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038679-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038679-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

18.0Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.92	3.60
polyp at pH7 6	18	15	1.83	3.74
coral polyp · control treatment	16	16	3.70	15.64
coral polyp · oil and dispersant treatment	16	16	2.80	17.96
coral polyp · oil treatment	16	16	2.98	6.73
coral polyp · dispersant treatment	16	16	1.50	3.35
Polyp	10	9	2.97	5.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.93
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.