Gene detail

Detailed information of OS493_038729-T1 in Lophelia pertusa

Genomic Location: scaffold_696:3416...15003
NR annotation: KAJ7315447.1, Mediator of RNA polymerase II transcription subunit 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60244	Mediator of RNA polymerase II transcription subunit 14 OS=Homo sapiens OX=9606 GN=MED14 PE=1 SV=2
A2ABV5	Mediator of RNA polymerase II transcription subunit 14 OS=Mus musculus OX=10090 GN=Med14 PE=1 SV=1
Q7Q6S8	Mediator of RNA polymerase II transcription subunit 14 OS=Anopheles gambiae OX=7165 GN=MED14 PE=3 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002929 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_038729-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013947 all species →	Family	Mediator complex, subunit Med14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12809 all species →	MEDIATOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038729-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038729-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

19.6Max TPM

9.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.40	16.39
polyp at pH7 6	18	17	8.55	18.46
coral polyp · control treatment	16	16	11.43	19.57
coral polyp · oil and dispersant treatment	16	16	9.19	16.91
coral polyp · oil treatment	16	16	10.28	17.70
coral polyp · dispersant treatment	16	16	8.97	18.09
Polyp	10	9	7.02	14.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.