Gene detail

Detailed information of OS493_038730-T1 in Lophelia pertusa

Genomic Location: scaffold_696:15093...21816
NR annotation: KAJ7315448.1, Mediator of RNA polymerase II transcription subunit 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002929 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_038730-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR013947 all species →	Family	Mediator complex, subunit Med14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12809 all species →	MEDIATOR COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038730-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038730-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

39.8Max TPM

14.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	13.63	22.85
polyp at pH7 6	18	15	13.93	33.06
coral polyp · control treatment	16	16	17.49	31.56
coral polyp · oil and dispersant treatment	16	15	12.18	23.99
coral polyp · oil treatment	16	16	15.37	39.81
coral polyp · dispersant treatment	16	16	12.56	25.55
Polyp	10	9	17.37	34.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.85
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.87
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.