Gene detail

Detailed information of OS493_038744-T1 in Lophelia pertusa

Genomic Location: scaffold_700:39583...41554
NR annotation: KAJ7369477.1, hypothetical protein OS493_038744 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000367 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00931 all species →	NB-ARC	NB-ARC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039203 all species →	Family	Disease resistance protein RGA2/3-like	Interproscan
IPR002182 all species →	Domain	NB-ARC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36766 all species →	PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0050832 all species →	Biological Process	defense response to fungus	Interproscan
GO:0043531 all species →	Molecular Function	ADP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038744-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038744-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

34.2Max TPM

8.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.49	17.34
polyp at pH7 6	18	18	4.95	11.55
coral polyp · control treatment	16	16	11.78	34.18
coral polyp · oil and dispersant treatment	16	16	11.07	21.72
coral polyp · oil treatment	16	15	7.42	15.08
coral polyp · dispersant treatment	16	16	8.98	28.72
Polyp	10	10	6.24	13.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.09
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.