Gene detail

Detailed information of OS493_038758-T1 in Lophelia pertusa

Genomic Location: scaffold_707:30094...36826
NR annotation: KAJ7349530.1, hypothetical protein OS493_038758, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9MYP6	L-fucose dehydrogenase OS=Bos taurus OX=9913 GN=HSD17B14 PE=2 SV=1
E9Q3D4	L-fucose dehydrogenase OS=Mus musculus OX=10090 GN=Hsd17b14 PE=3 SV=1
Q9BPX1	L-fucose dehydrogenase OS=Homo sapiens OX=9606 GN=HSD17B14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008408 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43658 all species →	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004303 all species →	Molecular Function	estradiol 17-beta-dehydrogenase [NAD(P)+] activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006706 all species →	Biological Process	steroid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038758-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038758-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

98.4Max TPM

40.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.00	45.95
polyp at pH7 6	18	18	34.15	56.47
coral polyp · control treatment	16	16	52.45	86.12
coral polyp · oil and dispersant treatment	16	16	48.05	93.93
coral polyp · oil treatment	16	16	48.90	98.41
coral polyp · dispersant treatment	16	16	34.59	61.11
Polyp	10	10	27.52	40.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.44
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.66
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	24.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	22.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.