Gene detail

Detailed information of OS493_038794-T1 in Lophelia pertusa

Genomic Location: scaffold_721:4103...11222
NR annotation: KAJ7315273.1, 7-methylguanosine phosphate-specific 5'-nucleotidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q969T7	7-methylguanosine phosphate-specific 5'-nucleotidase OS=Homo sapiens OX=9606 GN=NT5C3B PE=1 SV=4
Q6AYP7	7-methylguanosine phosphate-specific 5'-nucleotidase OS=Rattus norvegicus OX=10116 GN=Nt5c3b PE=2 SV=2
Q3UFY7	7-methylguanosine phosphate-specific 5'-nucleotidase OS=Mus musculus OX=10090 GN=Nt5c3b PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003751 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05822 all species →	UMPH-1	Pyrimidine 5'-nucleotidase (UMPH-1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006434 all species →	Family	Pyrimidine 5'-nucleotidase, eukaryotic	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13045 all species →	5'-NUCLEOTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008253 all species →	Molecular Function	5'-nucleotidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038794-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038794-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

11.3Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.40	7.87
polyp at pH7 6	18	16	5.15	11.33
coral polyp · control treatment	16	16	3.38	6.33
coral polyp · oil and dispersant treatment	16	15	3.07	7.77
coral polyp · oil treatment	16	15	3.86	8.57
coral polyp · dispersant treatment	16	15	2.21	5.28
Polyp	10	9	3.46	8.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.