Gene detail

Detailed information of OS493_038799-T1 in Lophelia pertusa

Genomic Location: scaffold_727:19604...25892
NR annotation: KAJ7388284.1, hypothetical protein OS493_038799, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46413	Glutathione synthetase OS=Rattus norvegicus OX=10116 GN=Gss PE=1 SV=1
Q5EAC2	Glutathione synthetase OS=Bos taurus OX=9913 GN=GSS PE=2 SV=1
P51855	Glutathione synthetase OS=Mus musculus OX=10090 GN=Gss PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001279 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03917 all species →	GSH_synth_ATP	Eukaryotic glutathione synthase, ATP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005615 all species →	Family	Glutathione synthase	Interproscan
IPR014049 all species →	Homologous_superfamily	Glutathione synthase, N-terminal, eukaryotic	Interproscan
IPR014042 all species →	Homologous_superfamily	Glutathione synthase, alpha-helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11130 all species →	GLUTATHIONE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004363 all species →	Molecular Function	glutathione synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0043295 all species →	Molecular Function	glutathione binding	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038799-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038799-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

78TPM > 0

7Conditions

5.1Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	10	1.28	4.08
polyp at pH7 6	18	10	1.20	3.27
coral polyp · control treatment	16	14	1.85	5.13
coral polyp · oil and dispersant treatment	16	12	1.13	3.06
coral polyp · oil treatment	16	13	1.47	2.87
coral polyp · dispersant treatment	16	13	1.57	4.16
Polyp	10	6	0.44	1.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.77
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.