Gene detail

Detailed information of OS493_038806-T1 in Lophelia pertusa

Genomic Location: scaffold_732:4502...16180
NR annotation: KAJ7315268.1, hypothetical protein OS493_038806 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98UF7	Pecanex-like protein 1 OS=Takifugu rubripes OX=31033 GN=pcnx1 PE=3 SV=1
Q96RV3	Pecanex-like protein 1 OS=Homo sapiens OX=9606 GN=PCNX1 PE=1 SV=2
Q9QYC1	Pecanex-like protein 1 OS=Mus musculus OX=10090 GN=Pcnx1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002671 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_038806-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039797 all species →	Family	Protein Pecanex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12372 all species →	PECANEX	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_038806-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_038806-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038806-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

17.0Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.48	9.98
polyp at pH7 6	18	15	4.70	7.41
coral polyp · control treatment	16	16	6.28	11.13
coral polyp · oil and dispersant treatment	16	16	6.51	17.03
coral polyp · oil treatment	16	16	4.83	7.14
coral polyp · dispersant treatment	16	16	4.77	7.83
Polyp	10	9	2.12	3.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.