Gene detail

Detailed information of OS493_038834-T1 in Lophelia pertusa

Genomic Location: scaffold_749:19937...33490
NR annotation: KAJ7349522.1, hypothetical protein OS493_038834, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002432 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08357 all species →	SEFIR	SEFIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013568 all species →	Domain	SEFIR domain	Interproscan
IPR039465 all species →	Family	Interleukin-17 receptor-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15583 all species →	INTERLEUKIN-17 RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030368 all species →	Molecular Function	interleukin-17 receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05165	IL17RB, IL17RH1; interleukin 17 receptor B	-	Cytokine receptors	ko04050	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038834-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

165.1Max TPM

66.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.31	68.36
polyp at pH7 6	18	18	39.79	61.32
coral polyp · control treatment	16	16	83.32	119.09
coral polyp · oil and dispersant treatment	16	16	99.45	144.52
coral polyp · oil treatment	16	16	79.13	125.57
coral polyp · dispersant treatment	16	16	72.60	165.09
Polyp	10	10	52.93	88.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.12
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.40
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.63
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.68
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	88.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	64.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	62.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.76
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	56.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	49.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	46.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	40.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.