Gene detail

Detailed information of OS493_038841-T1 in Lophelia pertusa

Genomic Location: scaffold_753:5280...13438
NR annotation: KAJ7375789.1, Radial spoke head 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D3W1	Radial spoke head 14 homolog OS=Mus musculus OX=10090 GN=Rsph14 PE=1 SV=1
Q9UHP6	Radial spoke head 14 homolog OS=Homo sapiens OX=9606 GN=RSPH14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007539 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13646 all species →	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR042856 all species →	Family	Radial spoke protein 14	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15599 all species →	RTDR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25459	RSPH14, RTDR1; radial spoke head protein 14	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_038841-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

46.4Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.04	21.58
polyp at pH7 6	18	18	16.13	27.81
coral polyp · control treatment	16	16	15.51	32.72
coral polyp · oil and dispersant treatment	16	16	10.78	39.89
coral polyp · oil treatment	16	16	13.60	20.36
coral polyp · dispersant treatment	16	16	9.86	15.52
Polyp	10	10	24.41	46.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.09
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.72
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	43.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	24.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.